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Publications

This list includes papers with co-authorship of IMSC-employed or supporting personnel: Hjalmar Permentier, Wim Huibers and Marcel de Vries (seconded to IMSC from UMCG, from 2013), Karin Wolters (from 2015), Peter Horvatovich (from 2018) as well as former IMSC personnel: Andries Bruins, Margot Jeronimus-Stratingh, Annie van Dam, and Walid Maho.
From 2019 on, papers where IMSC or IMSC-employed personnel is acknowledged are separately included in the list.

2024

Publications:

  • Bartel S, Wolters JC, Noor H, Rafie K, Fang J, Kirchner B, Nolte-′t Hoen E, Pfaffl MW, Rutgers S, Timens W, van den Berge M, Hylkema MN. 2024. Altered extracellular vesicle-derived protein and microRNA signatures in bronchoalveolar lavage fluid from patients with chronic obstructive pulmonary disease. Cells 13(11): 945.
  • Guan Z, Song Y, de Vries M, Permentier H, Tepper P, van Merkerk R, Setroikromo R, Quax WJ. 2024. The promiscuity of squalene synthase-like enzyme: dehydrosqualene synthase, a natural squalene hyperproducer? Journal of Agricultural and Food Chemistry 72(6): 3017-3024.
  • Heida A, van Dijk T, Smit M, Koehorst M, Koster M, Kloosterhuis N, Havinga R, Bloks VW, Wolters JC, de Bruin A, Kuivenhoven JA, de Boer JF, Kuipers F, van de Sluis B. 2024. Changes in bile acid composition are correlated with reduced intestinal cholesterol uptake in intestine-specific WASH-deficient mice. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids 1869(2): 159445.
  • Hermans J, Alipour Najmi A, Permentier H, Bischoff R. 2024. Online coupling of a catalytic continuous microflow reactor to mass spectrometry. Talanta 266(1): 124928.
  • Krishnamurthy KA, Rutten MGS, Hoogerland JA, van Dijk TH, Bos T, Koehorst M, de Vries MP, Kloosterhuis NJ, Havinga H, Schomakers BV, van Weeghel M, Wolters JC, Bakker BM, Oosterveer MH. 2024. Hepatic ChREBP orchestrates intrahepatic carbohydrate metabolism to limit hepatic glucose 6-phosphate and glycogen accumulation in a mouse model for acute Glycogen Storage Disease type Ib. Molecular Metabolism 79: 101838.
  • Martínez-Aguilar M, Trillos-Almanza MC, Wolters JC, Buist-Homan M, TransplantLines Investigators, van Vilsteren F, Blokzijl H, Moshage H. 2024. Optimization of protocols for blood-derived extracellular vesicles for studies in liver diseases. Exploration of Digestive Diseases 3: 143-162.
  • Moadab F, Sohrabi S, Wang X, Najjar R, Wolters JC, Jiang H, Miao W, Romero D, Zaller DM, Tran M, Bays A, Taylor MS, Kapeller R, LaCava J, Mustelin T. 2024. Subcellular location of L1 retrotransposon-encoded ORF1p, reverse transcription products, and DNA sensors in lupus granulocytes. Mobile DNA 15: 14.
  • Otto TA, Bergsma T, Dekker M, Mouton SN, Gallardo P, Wolters JC, Steen A, Onck PR, Veenhoff LM. 2024. Nucleoporin Nsp1 surveils the phase state of FG-Nups. Cell Reports 43(10): 114793.
  • Pedersen MP, Wolters JC, de Boer R, Krikken AM, van der Klei IJ. 2024. The Hansenula polymorpha mitochondrial carrier family protein Mir1 is dually localized at peroxisomes and mitochondria. Biochimica et Biophysica Acta - Molecular Cell Research 1871(5): 119742.
  • Russo S, Kwiatkowski M, Wolters JC, Gerding A, Hermans J, Govorukhina N, Bischoff R, Melgert BN. 2024. Effects of lysine deacetylase inhibitor treatment on LPS responses of alveolar-like macrophages. Journal of Leukocyte Biology 115(3): 435-449.
  • Thorne AM, Hoekzema M, Porte RJ, Kuipers F, de Meijer VE, Wolters JC. 2024. Comparative analysis of digestion methods for bile proteomics: the key to unlocking biliary biomarker potential. Analytical Chemistry 96(36): 14393-14404.
  • De Vos K, Mavrogiannis A, Wolters JC, Schlenner S, Wierda K, Calabuig AC, Chinnaraj R, Dermesrobian V, Yeghig Armoudjian Y, Jacquemyn M, Nikky Corthout N, Daelemans D, Annaert P. 2024. Tankyrase1/2 inhibitor XAV-939 reverts EMT and suggests that PARylation partially regulates aerobic activities in human hepatocytes and HepG2 cells. Biochemical Pharmacology 227: 116445.
  • Wang J, Zhao F, Brouwer LA, Buist-Homan M, Wolters JC, Moshage H, Harmsen MC. 2024. Collagen-rich liver-derived extracellular matrix hydrogels augment survival and function of primary rat liver sinusoidal endothelial cells and hepatocytes. International Journal of Biological Macromolecules 278(2): 134717.

Acknowledged contributions:

  • Bailoni E, Patiño-Ruiz MF, Stan AR, Schuurman-Wolters GK, Exterkate M, Driessen AJM, Poolman B. 2024. Synthetic vesicles for sustainable energy recycling and delivery of building blocks for lipid biosynthesis. ACS Synthetic Biology 13(5): 1549-1561.
  • Chen D, Zhao C, Zhang J, Knol CWJ, Osipyan A, Majerníková N, Chen T, Xiao Z, Adriana J, Griffith AJ, Soto Gamez A, van der Wouden PE, Coppes RP, Dolga AM, Haisma HJ, Dekker FJ. 2024. Small molecule MIF modulation enhances ferroptosis by impairing DNA repair mechanisms. Advanced Science 11(32): 2403963.
  • Li J, Zheng Q, Dömling A. 2024. Exploring phthalimide as the acid component in the Passerini reaction. Organic Letters 26(4): 829-833.
  • Osipyan A, Bulai RG, Wu Z, de Witte J, van der Velde JJH, Kader M, van der Wouden PE, Poelarends GJ, Dekker FJ. 2024. The synthesis of 1,2,3-triazoles as binders of D-dopachrome tautomerase (D-DT) for the development of dual-targeting inhibitors. European Journal of Medicinal Chemistry 276: 116665.
  • Pinheiro-Machado E, Faas MM, de Haan BJ, Moers C, Smink AM. 2024. Culturing conditions dictate the composition and pathways enrichment of human and rat perirenal adipose-derived stromal cells’ secretome. Stem Cell Reviews and Reports doi.org/10.1007/s12015-024-10748-w.
  • Russo S, Prats Luján A, Fraaije MW, Poelarends GJ. 2024. Synthesis of pharmaceutically relevant arylamines enabled by a nitroreductase from Bacillus tequilensis. ChemBioChem 25(10): e202300846.
  • Soto-Gamez A, van Es M, Hageman E, Serna-Salas SA, Moshage H, Demaria M, Pringle S, Coppes RP. 2024. Mesenchymal stem cell-derived HGF attenuates radiation-induced senescence in salivary glands via compensatory proliferation. Radiotherapy and Oncology 190: 109984.
  • Visser N, Herreman LCM, Vandooren J, Sousa Pereira RV, Opdenakker G, Spelbrink REJ, Wilbrink MH, Bremer E, Gosens R, Nawijn MC, van der Ende‑Metselaar HH, Smit JM, Laus MC, Laman JD. 2024. Novel high‑yield potato protease inhibitor panels block a wide array of proteases involved in viral infection and crucial tissue damage. Journal of Molecular Medicine 102: 521-536.

2023

Publications:

  • Bekker NJ, van Pijkeren A, Wolters JC, Sánchez Brotons A, Guryev V, Woldhuis RR, Bischoff R, Alkema W, Horvatovich P, Van Nijnatten JLL, van den Berge M, Timens W, Brandsma CA. 2023. A proteomics approach to identify COPD-related changes in lung fibroblasts. American Journal of Physiology - Lung Cellular and Molecular Physiology 324(4): L521-L535.
  • Deprince A, Hennuyer N, Kooijman S, Pronk ACM, Baugé E, Lienard V, Verrijken A, Dirinck E, Vonghia L, Woitrain E, Kloosterhuis NJ, Marez E, Jacquemain P, Wolters JC, Lalloyer F, Eberlé D, Quemener S, Vallez E, Tailleux A, Kouach M, Goossens JF, Raverdy V, Derudas B, Kuivenhoven JA, Croyal M, van de Sluis B, Francque S, Pattou F, Rensen PCN, Staels B, Haas JT. 2023. Apolipoprotein F is reduced in humans with steatosis and controls plasma triglyceride-rich lipoprotein metabolism. Hepatology 77(4): 1287-1302.
  • Koloko Ngassie ML, de Vries M, Borghuis, Timens W, Sin DD, Nickle D, Joubert P, Horvatovich P, Marko-Varga G, Teske JJ, Vonk JM, Gosens R, Prakash YS, Burgess JK, Brandsma CA. 2023. Age-associated differences in the human lung extracellular matrix. American Journal of Physiology - Lung Cellular and Molecular Physiology 324(6): L799–L814.
  • Lin C, Mostafa A, Jans A, Wolters JC, Mohamed MR, Van der Vorst EPC, Trautwein C, Bartneck M. 2023. Targeting ligand independent tropism of siRNA-LNP by small molecules for directed therapy of liver or myeloid immune cells. Advanced Healthcare Materials 2202670.
  • Nijholt KT, Sánchez-Aguilera PI, Mahmoud B, Gerding A, Wolters JC, Wolters AHG, Giepmans BNG, Silljé HHW, de Boer RA, Bakker BM, Westenbrink BD. 2023. A Kinase Interacting Protein 1 regulates mitochondrial protein levels in energy metabolism and promotes mitochondrial turnover after exercise. Scientific Reports 13(1): 18822.
  • Odendaal C, Jager EA, Martines AMF, Vieira-Lara MA, Huijkman NCA, Kiyuna LA, Gerding A, Wolters JC, Heiner-Fokkema R, van Eunen K, Derks TGJ, Bakker BM. 2023. Personalised modelling of clinical heterogeneity between medium-chain acyl-CoA dehydrogenase patients. BMC Biology 21(1): 184.
  • 28. Olaleye O, Spanov B, Bults P, van der Voort A, Govorukhina N, Sonke GS, Horvatovich P, van de Merbel NC, Bischoff R. 2023. Biotransformation of trastuzumab and pertuzumab in breast cancer patients assessed by affinity enrichment and ion-exchange chromatography. Drug Metabolism and Disposition 51(2): 249-256.
  • Rutten MGS, Lei Y, Hoogerland JH, Bloks VW, Yang H, Bos T, Krishnamurthy KA, Bleeker A, Koster MH, Thomas RE, Wolters JC, van den Bos H, Mithieux G, Rajas F, Mardinoglu A, Spierings DCJ, de Bruin A, van de Sluis B, Oosterveer MH. 2023. Normalization of hepatic ChREBP activity does not protect against liver disease progression in a mouse model for Glycogen Storage Disease type Ia. Cancer & Metabolism 11: 5.
  • Sabogal-Guáqueta AM, Marmolejo-Garza A, Trombetta-Lima M, Oun A, Hunneman J, Chen T, Koistinaho J, Lehtonen S, Kortholt A, Wolters JC, Bakker BM, Eggen BJL, Boddeke E, Dolga A. 2023. Species-specific metabolic reprogramming in human and mouse microglia during inflammatory pathway induction. Nature Communications 14(1): 6454.
  • Taylor MS, Wu C, Fridy PC, Zhang SJ, Senussi Y, Wolters JC, Cajuso T, Cheng WC, Heaps JD, Miller BD, Mori K, Cohen L, Jiang H, Molloy KR, Chait BT, Goggins MG, Bhan I, Franses JW, Yang X, Taplin ME, Wang X, Christiani DC, Johnson BE, Meyerson M, Uppaluri R, Egloff AM, Denault EN, Spring LM, Wang TL, Shih IM, Fairman JE, Jung E, Arora KS, Yilmaz OH, Cohen S, Sharova T, Chi G, Norden BL, Song Y, Nieman LT, Pappas L, Parikh AR, Strickland MR, Corcoran RB, Mustelin T, Eng G, Yilmaz ÖH, Matulonis UA, Chan AT, Skates SJ, Rueda BR, Drapkin R, Klempner SJ, Deshpande V, Ting DT, Rout MP, LaCava J, Walt DR, Burns KH. 2023. Ultrasensitive detection of circulating LINE-1 ORF1p as a specific multicancer biomarker. Cancer Discovery 13(12): 2532-2547.
  • Thorne AM, Wolters JC, Lascaris B, Bodewes SB, Lantinga VA, van Leeuwen OB, de Jong IEM, Ustyantsev K, Berezikov E, Lisman T, Kuipers F, Porte RJ, de Meijer VE. 2023. Bile proteome reveals biliary regeneration during normothermic preservation of human donor livers. Nature Communications 14(1): 7880.
  • Tian X, Permentier HP, Bischoff R. 2023. Chemical isotope labeling for quantitative proteomics. Mass Spectrometry Reviews 42: 546-576.
  • Verzijl CRC, van de Peppel IP, Eilers RE, Bloks VW, Wolters JC, Koehorst M, Kloosterhuis NJ, Havinga R, Jalving M, Struik D, Jonker JW. 2023. Pharmacological inhibition of MEK1/2 signaling disrupts bile acid metabolism through loss of Shp and enhanced Cyp7a1 expression. Biomedicine & Pharmacotherapy 159: 114270.
  • Vieira-Lara MA, Reijne AC, Koshian S, Ciapaite J, Abegaz F, Talarovicova A, van Dijk TH, Versloot CJ, Bandsma RHJ, Wolters JC, Groen AK, Reijngoud DJ, van Dijk G, Bakker BM. 2023. Age and diet modulate the insulin-sensitizing effects of exercise: a tracer-based oral glucose tolerance test. Diabetes db220746.
  • Vos DY, Wijers M, Smit M, Huijkman N, Kloosterhuis NJ, Wolters JC, Tissink JJ, Pronk ACM, Kooijman S, Rensen PCN, Kuivenhoven JA, van de Sluis B. 2023. Cargo-specific role for retriever subunit VPS26C in hepatocyte lipoprotein receptor recycling to control postprandial triglyceride-rich lipoproteins. Arteriosclerosis, Thrombosis, and Vascular Biology 43(1): e29-e45.
  • Zhou W, Colpa DI, Permentier H, Offringa RA, Rohrbach L, Euverink GJW, Krooneman J. 2023. Insight into polyhydroxyalkanoate (PHA) production from xylose and extracellular PHA degradation by a thermophilic Schlegelella thermodepolymerans. Resources, Conservation and Recycling 194: 107006.
  • van Zwol W, Rimbert A, Wolters JC, Smit M, Bloks VW, Kloosterhuis NJ, Huijkman N, Koster MH, Tharehalli U, de Neck SM, Bournez C, Fuh MM, Kuipers J, Rajan S, de Bruin A, Ginsberg HN, van Westen GJP, Hussain MM, Scheja L, Heeren J, Zimmerman P, van de Sluis B, Kuivenhoven JA. 2023. Loss of hepatic SMLR1 causes hepatosteatosis and protects against atherosclerosis due to decreased hepatic VLDL secretion. Hepatology 78(5): 1418-1432.

Acknowledged contributions:

  • Aliyandi A, Reker-Smit C, Zuhorn IS, Salvati A. 2023. Cell surface biotinylation to identify the receptors involved in nanoparticle uptake into endothelial cells. Acta Biomaterialia 155: 507-520.
  • Chen D, Osipyan A, Adriana J, Kader M, Gureev M, Knol CWJ, Sigmund M-C, Xiao Z, van der Wouden PE, Cool RH, Poelarends GJ, Dekker FJ. 2023. Allosteric inhibitors of macrophage migration inhibitory factor (MIF) interfere with apoptosis-inducing factor (AIF) co-localization to prevent parthanatos. Journal of Medicinal Chemistry 66(13): 8767-8781.
  • Fu Y, Zhou L, Kuipers O. 2023. Discovery, biosynthesis, and characterization of a lanthipeptide from Bacillus subtilis EH11 with a unique lanthionine ring pattern. Cell Reports Physical Science 4(8): 101524.
  • He T, Li X, Iacovelli R, Hackl T, Haslinger K. 2023. Genomic and metabolomic analysis of the endophytic fungus Fusarium sp. VM-40 isolated from the medicinal plant Vinca minor. Journal of Fungi 9(7): 704.
  • Kirkpatrick J, Stemmer PM, Searle BC, Herring LE, Martin L, Midha MK, Phinney BS, Shan B, Palmblad M, Wang Y, Jagtap PD, Neely BA. 2023. 2019 Association of Biomolecular Resource Facilities multi-laboratory data-independent acquisition proteomics study. Journal of Biomolecular Techniques 34(2): 2023 Jul 1.
  • Li X, Zarganes-Tzitzikas T, Kurpiewska K, Dömling A. 2023. Amenamevir by Ugi-4CR. Green Chemistry 25: 1322-1325.
  • Peng B, Dai L, Iacovelli R, Driessen AJM, Haslinger K. 2023. Heterologous naringenin production in the filamentous fungus Penicillium rubens. Journal of Agricultural and Food Chemistry 71(51): 20782-20792.
  • Rao A, de Kok NAW, Driessen AJM. 2023. Membrane adaptations and cellular responses of Sulfolobus acidocaldarius to the allylamine terbinafine. International Journal of Molecular Sciences 24(8): 7328.

2022

Publications:

  • Alipour Najmi A, Bischoff R, Permentier HP. 2022. N-Dealkylation of amines. Molecules 27(10): 3293.
  • Alipour Najmi A, Jafariyeh-Yazdi E, Hadian M, Hermans J, Bischoff R, Yue J, Dömling A, Wittstock A, Permentier HP. 2022. Nanoporous gold catalyst for the oxidative N-dealkylation of drug molecules: A method for synthesis of N-dealkylated metabolites. ChemMedChem 17(11): e202200040.
  • Blankestijn M, Bloks VW, Struik D, Huijkman N, Kloosterhuis N, Wolters JC, Wanders RJA, Vaz FM, Islinger M, Kuipers F, van de Sluis B, Groen AK, Verkade HJ, Jonker JW. 2022. Mice with a deficiency in Peroxisomal Membrane Protein 4 (PXMP4) display mild changes in hepatic lipid metabolism. Scientific Reports 12(1): 2512.
  • Boonekamp FJ, Knibbe E, Vieira-Lara MA, Wijsman M, Luttik MAH, van Eunen K, Ridder MD, Bron R, Almonacid Suarez AM, van Rijn P, Wolters JC, Pabst M, Daran JM, Bakker BM, Daran-Lapujade P. 2022. Full humanization of the glycolytic pathway in Saccharomyces cerevisiae. Cell Reports 39(13): 111010.
  • Estrada-Ortiz N, Starokozhko V, van Steenwijk H, van der Heide C, Permentier H, van Heemskerk L, Prins GH, Heegsma J, Faber KN, Bressers S, Steiblen G, de Groot A, Groome S, van Miert E, Groothuis G, de Graaf IAM. 2022. Disruption of vitamin A homeostasis by the biocide tetrakis(hydroxymethyl) phosphonium sulphate in pregnant rabbits. Journal of Applied Toxicology 42(12): 1921-1936.
  • Gupta A, Burgess JK, Borghuis T, de Vries MP, Kuipers J, Permentier HP, Bischoff R, Slebos DJ, Pouwels SD. 2022. Identification of damage associated molecular patterns and extracellular matrix proteins as major constituents of the surface proteome of lung implantable silicone/nitinol devices. Acta Biomaterialia 141: 209-218.
  • Joshi BS, Garcia Romeu H, Aliyandi A, de Vries MP, Zuhorn IS. 2022. DNAJB6-containing extracellular vesicles as chaperone delivery systems: a proteomic analysis. Pharmaceutics 14: 2485.
  • Karsten REH, Krijnen NJW, Maho W, Permentier H, Verpoorte E, Olinga P. 2022. Mouse precision-cut liver slices as an ex vivo model to study drug-induced cholestasis. Archives of Toxicology 96: 2523-2543.
  • Klont F, Horvatovich P, Bowler RP, van Rikxoort E, Charbonnier JP, Kwiatkowski M, Lynch DA, Humphries S, Bischoff R, ten Hacken NHT, Pouwels SD. 2022. Plasma sRAGE levels strongly associate with centrilobular emphysema assessed by HRCT scans. Respiratory Research 23: 15.
  • Marcondes MFM, Santos GS, Bronze F, Machado MFM, Perez KR, Hesselink R, de Vries MP, Broos J, Oliveira V. 2022. Probing the conformational states of thimet oligopeptidase in solution. International Journal of Molecular Sciences 23(13): 7297.
  • Rios-Morales M, Vieira-Lara MA, Homan E, Langelaar-Makkinje M, Gerding A, Li Z, Huijkman N, Rensen PCN, Wolters JC, Reijngoud DJ, Bakker BM. 2022. Butyrate oxidation attenuates the butyrate-induced improvement of insulin sensitivity in myotubes. Biochimica et Biophysica Acta - Molecular Basis of Disease. 1868(11): 166476.
  • Tian Y, Nusantara AC, Hamoh T, Mzyk A, Tian X, Perona Martinez F, Li R, Permentier HP, Schirhagl R. 2022. Functionalized fluorescent nanodiamonds for simultaneous drug delivery and quantum sensing in HeLa cells. ACS Applied Materials & Interfaces 14(34): 39265-39273.
  • Verzijl CRC, Oldoni F, Loaiza N, Wolters JC, Rimbert A, Tian E, Yang W, Struik D, Smit M, Kloosterhuis NJ, Fernandez AJ, Samara NL, Ten Hagen KG, Dalal K, Chernish A, McCluggage P, Tabak LA, Jonker JW, Kuivenhoven JA. 2022. A novel role for GalNAc-T2 dependent glycosylation in energy homeostasis. Molecular Metabolism 260: 101472.
  • Yu Y, van der Zwaag M, Wedman JJ, Permentier H, Plomp N, Jia X, Kanon B, Eggens-Meijer E, Buist G, Harmsen H, Kok J, Falcao Salles J, Wertheim B, Hayflick SJ, Strauss E, Grzeschik NA, Schepers H, Sibon OCM. 2022. Coenzyme A precursors flow from mother to zygote and from microbiome to host. Molecular Cell 82: 1-16.
  • Zanoni P, Panteloglou G, Othman A, Haas JT, Meier R, Rimbert A, Futema M, Abou Khalil Y, Norrelykke SF, Rzepiela AJ, Stoma S, Stebler M, van Dijk F, Wijers M, Wolters JC, Dalila N, Huijkman NCA, Smit M, Gallo A, Carreau V, Philippi A, Rabès JP, Boileau C, Visentin M, Vonghia L, Weyler J, Francque S, Verrijken A, Verhaegen A, Van Gaal L, van der Graaf A, van Rosmalen BV, Robert J, Velagapudi S, Yalcinkaya M, Keel M, Radosavljevic S, Geier A, Tybjaerg-Hansen A, Varret M, Rohrer L, Humphries SE, Staels B, van de Sluis B, Kuivenhoven JA, von Eckardstein A. 2022 Posttranscriptional regulation of the human LDL receptor by the U2-spliceosome. Circulation Research 130(1): 80-95.
  • Zhang Y, Dreyer B, Govorukhina N, Heberle AM, Končarević S, Krisp C, Opitz CA, Pfänder P, Bischoff R, Schlüter H, Kwiatkowski M, Thedieck K, Horvatovich PL. 2022. Comparative assessment of quantification methods for tumor tissue phosphoproteomics. Analytical Chemistry 94(31): 10893-10906.

Acknowledged contributions:

  • Cunningham C, Erdem A, Alshamleh I, Geugien M, Pruis M, Pereira-Martins DA, van den Heuvel FAJ, Wierenga ATJ, ten Berge H, Dennebos R, van den Boom V, Hogeling SM, Weinhäuser I, Knops R, de Blaauw P, Heiner-Fokkema MR, Woolthuis C, Günther UL, Rego EM, Martens JHA, Jansen JH, Schwalbe H, Huls G, Schuringa JJ. 2022. Dietary methionine starvation impairs acute myeloid leukemia progression. Blood 140(19): 2037-2052.
  • Kohli J, Ge C, Fitsiou E, Doepner M, Brandenburg SM, Faller WJ, Ridky TW, Demaria M. 2022. Targeting anti-apoptotic pathways eliminates senescent melanocytes and leads to nevi regression. Nature Communications 13: 7923.
  • Liu H, Wolters A, Temel Y, Alosaimi F, Jahanshahi A, Hescham S. 2022. Deep brain stimulation of the nucleus basalis of Meynert in an experimental rat model of dementia: stimulation parameters and mechanisms. Neurobiology of Disease 171: 105797.
  • Spanov B, Aboagye V, Olaleye O, Govorukhina N, van de Merbal NC, Bischoff R. 2022. Effect of trastuzumab-HER2 complex formation on stress-induced modifications in the CDRs of trastuzumab. Frontiers in Chemistry 9: 794247.

2021

Publications:

  • Alipour Najmi A, Bhat MF, Bischoff R, Poelarends G, Permentier HP. 2021. TEMPO-mediated electrochemical N-demethylation of opiate alkaloids. ChemElectroChem 8(13): 2590-2596.
  • Aresti-Sanz J, Schwalbe M, Rodrigues Pereira R, Permentier H, El Aidy S. 2021. Stability of methylphenidate under various pH conditions in the presence or absence of gut microbiota. Pharmaceuticals 14(8): 733.
  • de Boer JF, de Vries HD, Palmiotti A, Li R, Doestzada M, Hoogerland JA, Fu J, La Rose AM, Westerterp M, Mulder NL, Hovingh MV, Koehorst M, Kloosterhuis NJ, Wolters JC, Bloks VW, Haas JT, Dombrowicz D, Staels B, van de Sluis B, Kuipers F. 2021. Cholangiopathy and biliary fibrosis in Cyp2c70-deficient mice are fully reversed by ursodeoxycholic acid. Cellular and Molecular Gastroenterology and Hepatology 11(4): 1045-1069.
  • Feng X, Zhang W, Kuipers F, Kema I, Barcaru A, Horvatovich P. 2021. Dynamic binning peak detection and assessment of various lipidomics liquid chromatography-mass spectrometry pre-processing platforms. Analytica Chimica Acta 1173: 338674.
  • Heida A, Gruben N, Catrysse L, Koehorst M, Koster M, Kloosterhuis NJ, Gerding A, Havinga R, Bloks VW, Bongiovanni L, Wolters JC, van Dijk T, van Loo G, de Bruin A, Kuipers F, Koonen DPY, van de Sluis B. 2021. The hepatocyte IKK:NF-κB axis promotes liver steatosis by stimulating de novo lipogenesis and cholesterol synthesis. Molecular Metabolism 54: 101349.
  • Hoogerland JA, Peeks F, Hijmans BS, Wolters JC, Kooijman S, Bos T, Bleeker A, van Dijk TH, Wolters H, Gerding A, van Eunen K, Havinga R, Pronk ACM, Rensen PCN, Mithieux G, Rajas F, Kuipers F, Reijngoud DJ, Derks TGJ, Oosterveer MH. 2021. Impaired Very-Low-Density Lipoprotein catabolism links hypoglycemia to hypertriglyceridemia in Glycogen Storage Disease type Ia. Journal of Inherited Metabolic Disease 44(4): 879-892.
  • Klont F, Kwiatkowski M, Faiz A, van den Bosch T, Pouwels, SD, Dekker FJ, ten Hacken NHT, Horvatovich P, Bischoff R. 2021. Adsorptive microtiter plates as solid supports in affinity purification workflows. Journal of Proteome Research 20(11): 5218-5221.
  • Maat H, Atsma TJ, Hogeling SM, Rodríguez-López A, Jaques J, Olthuis M, de Vries MP, Gravesteijn C, Brouwers-Vos AZ, van der Meer N, Datema S, Salzbrunn J, Huls G, Baas R, Martens JHA, van den Boom V, Schuringa JJ. 2021. The USP7-TRIM27 axis mediates non-canonical PRC1.1 function and is a druggable target in leukemia. iScience 24(5): 102435.
  • van Pijkeren A, Dietze J, Sánchez Brotons A, Egger AS, Lijster T, Barcaru A, Hotze M, Kobler P, Dekker FJ, Horvatovich P, Melgert BN, Ziegler M, Thedieck K, Heiland I, Bischoff R, Kwiatkowski M. 2021. Combined Metabolic and Chemical (CoMetChem) labeling using stable isotopes - a strategy to reveal site-specific histone acetylation and deacetylation rates by LC–MS. Analytical Chemistry 93(38): 12872-12880.
  • Rutten MGS, Derks TGJ, Huijkman NCA, Bos T, Kloosterhuis NJ, van de Kolk KCWA, Wolters JC, Koster MH, Bongiovanni L, Thomas RE, de Bruin A, van de Sluis B, Oosterveer MH. 2021. Modeling phenotypic heterogeneity of Glycogen Storage Disease type 1a liver disease in mice by somatic CRISPR/CRISPR-associated protein 9-mediated gene editing. Hepatology 74(5) : 2491-2507.
  • Sánchez Brotons A, Eriksson JO, Kwiatkowski M, Wolters JC, Kema IP, Barcaru A, Kuipers F, Bakker SJL, Bischoff R, Suits F, Horvatovich P. 2021. Pipelines and systems for threshold-avoiding quantification of LC-MS/MS Data. Analytical Chemistry 93(32): 11215-11224.
  • Stam J, Bartel S, Bischoff R, Wolters JC. 2021. Isolation of extracellular vesicles with combined enrichment methods. Journal of Chromatography B 1169: 122604.
  • Tian X, de Vries MP, Permentier HP, Bischoff R. 2021. The isotopic Ac-IP tag enables multiplexed proteome quantification in data-independent acquisition mode. Analytical Chemistry 93(23): 8196–8202.
  • Vieira-Lara MA, Dommerholt MB, Zhang W, Blankestijn M, Wolters JC, Abegaz F, Gerding A, van der Veen YT, Thomas R, van Os RP, Reijngoud DJ, Jonker JW, Kruit JK, Bakker BM. 2021. Age-related susceptibility to insulin resistance arises from a combination of CPT1B decline and lipid overload. BMC Biology 19(1): 154.

Acknowledged contributions:

  • Aliyandi A, Reker-Smit C, Bron R, Zuhorn I, Salvati A. 2021. Correlating corona composition and cell uptake to identify proteins affecting nanoparticle entry into endothelial cells. ACS Biomaterials Science & Engineering 7(12): 5573-5584.
  • Chatziioannou AC, Benjamins E, Pellis L, Haandrikman A, Dijkhuizen L, van Leeuwen SS. 2021. Extraction and quantitative analysis of goat milk oligosaccharides: composition, variation, associations, and 2′-FL variability. Journal of Agricultural and Food Chemistry 69(28): 7851-7862.
  • Liu J, Ye G, Potgieser HGO, Koopmans M, Sami S, Nugraha MI, Rosas Villalva D, Sun H, Dong J, Yang X, Qiu X, Yao C, Portale G, Fabiano S, Anthopoulos TD, Baran D, Havenith RWA, Chiechi RC, Koster LJA. 2021. Amphipathic side chain of a conjugated polymer optimizes dopant location toward efficient N-type organic thermoelectrics. Advanced Materials 33(4): 2006694.
  • Lkhagvadorj K, Zeng Z, Meyer KF, Verweij LP, Kooistra W, Reinders-Luinge M, Dijkhuizen HW, de Graaf IAM, Plösch T, Hylkema MN. 2021. Postnatal smoke exposure further increases the hepatic nicotine metabolism in prenatally smoke exposed male offspring and is linked with aberrant Cyp2a5 methylation International Journal of Molecular Sciences 22(1): 164.
  • de Vries RH, Viel JH, Kuipers OP, Roelfes G. 2021. Rapid and selective chemical editing of ribosomally synthesized and post-translationally modified Peptides (RiPPs) via Cu(II)-catalyzed beta-borylation of dehydroamino acids. Angewandte Chemie International Edition 60(8): 3946-3950.
  • Wang Q, Mgimpatsang KC, Li X, Dömling A. 2021. Isoquinolone-4-carboxylic acids by ammonia-Ugi-4CR and copper-catalyzed domino reaction. The Journal of Organic Chemistry 86(14): 9771-9780.
  • Yakovlieva L, Ramírez-Palacios C, Marrink SJ, Walvoort MTC. 2021. Semiprocessive hyperglycosylation of adhesin by bacterial protein N‑glycosyltransferases. ACS Chemical Biology 16(1): 165-175.
  • Yang K, Reker-Smit C, Stuart MCA, Salvati A. 2021. Effects of protein source on liposome uptake by cells: corona composition and impact of the excess free proteins. Advanced Healthcare Materials 10: 2100370.

2020

Publications:

  • Alipour Najmi A, Xiao Z, Bischoff R, Dekker FJ, Permentier HP. 2020. Electrochemical N-demethylation of tropane alkaloids. Green Chemistry 22: 6455-6463.
  • Brandsma CA, Guryev V, Timens W, Ciconelle A, Postma DS, Bischoff R, Johansson M, Ovchinnikova ES, Malm J, Marko-Varga G, Fehniger TE, van den Berge M, Horvatovich P. 2020. Integrated proteogenomic approach identifying a protein signature of COPD and a new splice variant of SORBS1. Thorax 75: 180-183.
  • de Boer JF, Verkade E, Mulder NL, de Vries HD, Huijkman N, Koehorst M, Boer T, Wolters JC, Bloks VW, van de Sluis B, Kuipers F. 2020. A human-like bile acid pool induced by deletion of hepatic Cyp2c70 modulates effects of FXR activation in mice. Journal of Lipid Research 61(3): 291-305.
  • Han J, Sun J, Song S, Beljaars L, Groothuis GMM, Permentier H, Bischoff R, Halmos GB, Verhoeven CJ, Amstalden van Hove ER, Horvatovich P, Casini A. 2020. Targeted imaging of integrins in cancer tissues using photocleavable Ru(II) polypyridine complexes as mass-tags. Chemical Communications 56: 5941-5944.
  • Hernandez-Valdes JA, Zhou L, de Vries MP, Kuipers OP. 2020. Impact of spatial proximity on territoriality among human skin bacteria. npj Biofilms and Microbiomes 6: 30
  • van Kessel SP, de Jong HR, Winkel SL, van Leeuwen SS, Nelemans SA, Permentier H, Keshavarzian A, El Aidy S. 2020. Gut bacterial deamination of residual levodopa medication for Parkinson’s disease. BMC Biology 18(1):137.
  • Lei Y, Hoogerland JA, Bloks VW, Bos T, Bleeker A, Wolters H, Wolters JC, Hijmans BS, van Dijk TH, Thomas R, van Weeghel M, Mithieux G, Houtkooper RH, de Bruin A, Rajas F, Kuipers F, Oosterveer MH. 2020. Hepatic carbohydrate response element binding protein activation limits nonalcoholic fatty liver disease development in a mouse model for Glycogen Storage Disease Type 1a. Hepatology 72(5) :1638-1653.
  • Loaiza N, Hartgers ML, Reeskamp LF, Balder JW, Rimbert A, Bazioti V, Wolters JC, Winkelmeijer M, Jansen HPG, Dallinga-Thie GM, Volta A, Huijkman N, Smit M, Kloosterhuis N, Koster M, Svendsen AF, van de Sluis B, Hovingh GK, Grefhorst A, Kuivenhoven JA. 2020. Taking one step back in familial hypercholesterolemia - STAP1 does not alter plasma LDL (Low-Density Lipoprotein) cholesterol in mice and humans. Arteriosclerosis, Thrombosis, and Vascular Biology 40(4): 973-985.
  • Rimbert A, Dalila N, Wolters JC, Huijkman N, Smit M, Kloosterhuis N, Riemsma M, van der Veen Y, Singla A, van Dijk F, Biobank-Based Integrative Omics Studies Consortium, Frikke-Schmidt R, Burstein E, Tybjærg-Hansen A, van de Sluis B, Kuivenhoven JA.. 2020. A common variant in CCDC93 protects against myocardial infarction and cardiovascular mortality by regulating endosomal trafficking of low-density lipoprotein receptor. European Heart Journal 41(9): 1040-1053.
  • Ronda OAHO, van de Heijning BJM, Martini I, Gerding A, Wolters JC, van der Veen YT, Koehorst M, Jurdzinski A, Havinga R, van der Beek EM, Kuipers F, Verkade HJ. 2020. Effects of an early life diet containing large phospholipid-coated lipid globules on hepatic lipid metabolism in mice. Scientific Reports 10(1): 16128.
  • Tian X, de Vries MP, Visscher SWJ, Permentier HP, Bischoff R. 2020. Selective maleylation-directed isobaric peptide termini labeling for accurate proteome quantification. Analytical Chemistry 92(11): 7836-7844.
  • Tian X, de Vries MP, Permentier HP, Bischoff R. 2020. A collision-induced dissociation cleavable isobaric tag for peptide fragment ion-based quantification in proteomics. Journal of Proteome Research 19(9): 3817-3824.
  • Tian X, de Vries MP, Permentier HP, Bischoff R. 2020. A versatile isobaric tag enables proteome quantification in Data Dependent and Data Independent Acquisition mode. Analytical Chemistry 92(24): 16149-16157.
  • Wegrzyn AB, Herzog K, Gerding A, Kwiatkowski M, Wolters JC, Dolga AM, van Lint AEM, Wanders RJA, Waterham HR, Bakker BM. 2020. Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease. FEBS Journal 287(23): 5096-5113.
  • Yang K, Mesquita B, Horvatovich P, Salvati A. 2020. Tuning liposome composition to modulate corona formation in human serum and cellular uptake. Acta Biomaterialia 106: 314-327.

Acknowledged contributions:

  • Nijland JG, Shin HY, Dore E, Rudinatha D, de Waal PP, Driessen AJM. 2020. D-glucose overflow metabolism in an evolutionary engineered high-performance D-xylose consuming Saccharomyces cerevisiae strain. FEMS Yeast Research 21(1): foaa062.
  • Rempel S, Gati C, Nijland M, Thangaratnarajah C, Karyolaimos A, de Gier JW, Guskov A, Slotboom DJ. 2020. A mycobacterial ABC transporter mediates the uptake of hydrophilic compounds. Nature 580: 409-412.
  • Valk-Weeber RL, Dijkhuizen L, Eshuis-de Ruiter T, van Leeuwen SS. 2020. Dynamic temporal variations in bovine lactoferrin glycan structures. Journal of Agricultural and Food Chemistry 68(2): 549-560.
  • Villar-Vesga J, Henao-Restrepo J, Voshart DC, Aguillon D, Villegas A, Castaño D, Arias-Londoño JD, Zuhorn IS, Ribovski L, Barazzuol L, Cardona-Gómez GP, Posada-Duque R. 2020. Differential profile of systemic extracellular vesicles from sporadic and familial Alzheimer's disease leads to neuroglial and endothelial cell degeneration. Frontiers in Aging Neuroscience 12: 587989.

2019

Publications:

  • Han JY, Permentier H, Bischoff R, Groothuis G, Casini A, Horvatovich P. 2019. Imaging of protein distribution in tissues using mass spectrometry: An interdisciplinary challenge. TRAC - Trends in Analytical Chemistry 112: 13-28.
  • Hoogerland JA, Lei Y, Wolters JC, de Boer JF, Bos T, Bleeker A, Mulder NL, van Dijk TH, Kuivenhoven JA, Rajas F, Mithieux G, Haeusler RA, Verkade HJ, Bloks VW, Kuipers F, Oosterveer MH. 2019. Glucose-6-Phosphate regulates hepatic bile acid synthesis in mice. Hepatology 70(6): 2171-2184.
  • Kumar N, van Dam A, Permentier H, van Faassen M, Kema I, Gahr M, Groothuis TGG. 2019. Avian yolk androgens are metabolized rather than taken up by the embryo during the first days of incubation. Journal of Experimental Biology 222(7): jeb193961.
  • Martines AMF, Gerding A, Stolle S, Vieira-Lara MA, Wolters JC, Jurdzinski A, Bongiovanni L, de Bruin A, van der Vlies P, van der Vries G, Bloks VW, Derks TGJ, Reijngoud DJ, Bakker BM. 2019. Transcriptome analysis suggests a compensatory role of the cofactors coenzyme A and NAD+ in medium-chain acyl-CoA dehydrogenase knockout mice. Scientific Reports 9(1): 14539.
  • Wijers M, Zanoni P, Liv N, Vos DY, Jäckstein MY, Smit M, Wilbrink S, Wolters JC, van der Veen YT, Huijkman N, Dekker D, Kloosterhuis N, van Dijk TH, Billadeau DD, Kuipers F, Klumperman J, von Eckardstein A, Kuivenhoven JA, van de Sluis B. 2019. The hepatic WASH complex is required for efficient plasma LDL and HDL cholesterol clearance. JCI Insight 4(11) : e126462.
  • Wolters JC, Permentier HP, Bakker BM, Bischoff R. 2019. Targeted proteomics to study mitochondrial biology. In: Mitochondria in Health and in Sickness, Book series: Advances in Experimental Medicine and Biology 1158: 101-117.

Acknowledged contributions:

  • Almomani R, Herkert JC, Posafalvi A, Post JG, Boven LG, van der Zwaag PA, Willems PHGM, van Veen-Hof IH, Verhagen JMA, Wessels MW, Nikkels PGJ, Wintjes LT, van den Berg MP, Sinke RJ, Rodenburg RJ, Niezen-Koning KE, van Tintelen JP, Jongbloed JDH. 2019. Homozygous damaging SOD2 variant causes lethal neonatal dilated cardiomyopathy. Journal of Medical Genetics 57(1): 23-30.
  • Azkanaz A, Rodríguez López A, de Boer B, Huiting W, Angrand PO, Vellenga E, Kampinga HH, Bergink S, Martens JHA, Schuringa JJ, van den Boom V. 2019. Protein quality control in the nucleolus safeguards recovery of epigenetic regulators after heat shock. eLife 8:e45205.
  • Biewenga L, Saravanan T, Kunzendorf A, van der Meer J-Y, Pijning T, Tepper PG, van Merkerk R, Charnock SJ, Thunnissen A-MWH, Poelarends GJ. 2019. Enantioselective synthesis of pharmaceutically active γ-aminobutyric acids using a tailor-made artificial Michaelase in one-pot cascade reactions. ACS Catalysis 9(2): 1503–1513.
  • Francia V, Yang K, Deville S, Reker-Smit C, Nelissen I, Salvati A. 2019. Corona composition can affect the mechanisms cells use to internalize nanoparticles. ACS Nano 13(10): 11107–11121.
  • Kaunietis A, Buivydas A, Čitavičius DJ, Kuipers OP. 2019. Heterologous biosynthesis and characterization of a glycocin from a thermophilic bacterium. Nature Communications 10: 1115.
  • van der Meeren LE, Kluiver J, Rutgers B, Alsagoor Y, Kluin PM, van den Berg A, Visser L. 2019. A super-SILAC based proteomics analysis of diffuse large B-cell lymphoma-NOS patient samples to identify new proteins that discriminate GCB and non-GCB lymphomas. PLoS ONE 14(10): e0223260.
  • Nagy RA, van Montfoort APA, Groen H, Homminga I, Andrei D, Mistry RH, Anderson JLC, Hoek A, Tietge UJF. 2019. Anti-oxidative function of follicular fluid HDL and outcomes of modified natural cycle-IVF. Scientific Reports 9: 12817.
  • Perona Martinez F, Nagl A, Guluzade S, Schirhagl R. 2019. Nanodiamond for sample preparation in proteomics. Analytical Chemistry 91: 9800-9805.
  • Seerangaiyan K, Maruthamuthu M, van Winkelhoff AJ, Winkel EG. 2019. Untargeted metabolomics of the bacterial tongue coating of intra-oral halitosis patients. Journal of Breath Research 13(4): 046010.

2018

Publications:

  • Chatziioannou AC, Wolters JC, Sarafidis K, Thomaidou A, Agakidis C, Govorukhina N, Kuivenhoven JA, Bischoff R, Theodoridis G. 2018. Targeted LC-MS/MS for the evaluation of proteomics biomarkers in the blood of neonates with necrotizing enterocolitis and late-onset sepsis. Analytical and Bioanalytical Chemistry 410(27): 7163-7175.
  • Van Erp AC, Rebolledo RA, Hoeksma D, Jespersen NR, Ottens PJ, Nørregaard R, Pedersen M, Laustsen C, Burgerhof JGM, Wolters JC, Ciapaite J, Bøtker HE, Leuvenink HGD, Jespersen B. 2018. Organ-specific responses during brain death: increased aerobic metabolism in the liver and anaerobic metabolism with decreased perfusion in the kidneys. Scientific Reports 8(1): 4405.
  • Fedoseienko A, Wijers M, Wolters JC, Dekker D, Smit M, Huijkman N, Kloosterhuis N, Klug H, Schepers A, Willems van Dijk K, Levels JHM, Billadeau DD, Hofker MH, van Deursen J, Westerterp M, Burstein E, Kuivenhoven JA, van de Sluis B. 2018. The COMMD family regulates plasma LDL levels and attenuates atherosclerosis through stabilizing the CCC complex in endosomal LDLR trafficking. Circulation Research 122(12): 1648-1660.
  • Gil A, Zhang W, Wolters JC, Permentier H, Boer T, Horvatovich P, Heiner-Fokkema R, Reijngoud DJ, Bischoff R. 2018. One- vs two-phase extraction: re-evaluation of sample preparation procedures for untargeted lipidomics in plasma samples. Analytical and Bioanalytical Chemistry 410(23): 5859-5870.
  • Gil A, Zhang W, Wolters JC, Permentier H, Horvatovich P, Heiner-Fokkema MR, Reijngoud DJ, Bischoff R. 2018. Omics Technology: lipidomics and its pitfalls during the pre-analytical stage. In: Reference Module in Chemistry, Molecular Sciences and Chemical Engineering. Elsevier.
  • Han JY, Räder AFB, Reichart F, Aikman B, Wenzel MN, Woods B, Weinmüller M, Ludwig BS, Stürup S, Groothuis GMM, Permentier HP, Bischoff R, Kessler H, Horvatovich P, Casini A. 2018. Bioconjugation of supramolecular metallacages to integrin ligands for targeted delivery of cisplatin. Bioconjugate Chemistry 29(11): 3856-3865.
  • Klont F, Bras L, Wolters JC, Ongay S, Bischoff R, Halmos GB, Horvatovich P. 2018. Assessment of sample preparation bias in mass spectrometry-based proteomics. Analytical Chemistry 90(8): 5405-5413.
  • Oldoni F, van Capelleveen JC, Dalila N, Wolters JC, Heeren J, Sinke RJ, Hui DY, Dallinga-Thie GM, Frikke-Schmidt R, Hovingh KG, van de Sluis B, Tybjærg-Hansen A, Kuivenhoven JA. 2018. Naturally occurring variants in LRP1 (Low-Density Lipoprotein Receptor-Related Protein 1) affect HDL (High-Density Lipoprotein) metabolism through ABCA1 (ATP-Binding Cassette A1) and SR-B1 (Scavenger Receptor Class B Type 1) in humans. Arteriosclerosis, Thrombosis, and Vascular Biology 38(7): 1440-1453.

2017

Publications:

  • de Boer JF, Schonewille M, Boesjes M, Wolters H, Bloks VW, Bos T, van Dijk TH, Jurdzinski A, Boverhof R, Wolters JC, Kuivenhoven JA, van Deursen JM, Oude Elferink RPJ, Moschetta A, Kremoser C, Verkade HJ, Kuipers F, Groen AK. Intestinal farnesoid X receptor controls transintestinal cholesterol excretion in mice. 2017. Gastroenterology 152(5): 1126-1138.
  • Gil A, Siegel D, Bonsing-Vedelaar S, Permentier H, Reijngoud DJ, Dekker F, Bischoff R. 2017. The degradation of nucleotide triphosphates extracted under boiling ethanol conditions is prevented by the yeast cellular matrix. Metabolomics 13(1): 1.
  • Gul T, Bischoff R, Permentier HP. 2017. Mechanism of aromatic hydroxylation of lidocaine at a Pt electrode under acidic conditions. Electrochimica Acta 224: 636-641.
  • Han J, Schmidt A, Zhang T, Permentier H, Groothuis GMM, Bischoff R, Kühn FE, Horvatovich P, Casini A. 2017. Bioconjugation strategies to couple supramolecular exo-functionalized palladium cages to peptides for biomedical applications. Chemical Communications 53: 1405-1408.
  • Hemelaar SR, Nagl A, Bigot F, Rodriguez-Garcia MM, de Vries MP, Chipaux M, Schirhagl R. 2017. The interaction of fluorescent nanodiamond probes with cellular media. Microchimica Acta 184: 1001-1009.
  • Janssens S, Ciapaite J, Wolters JC, van Riel NA, Nicolay K, Prompers JJ. 2017. An in vivo magnetic resonance spectroscopy study of the effects of caloric and non-caloric sweeteners on liver lipid metabolism in rats. Nutrients 9(5): 476.
  • Kuipers A, de Vries L, de Vries MP, Rink R, Bosma T, Moll GN. 2017. Semi-microbiological synthesis of an active lysinoalanine-bridged analog of glucagon-like-peptide-1. Peptides 91: 33-39.
  • Pantophlet AJ, Roelofsen H, de Vries MP, Gerrits WJJ, van den Borne JJGC, Vonk RJ. 2017. The use of metabolic profiling to identify insulin resistance in veal calves. PLOS One 12: e0179612.
  • Stolle S, Ciapaite J, Reijne AC, Talarovicova A, Wolters JC, Aguirre-Gamboa R, van der Vlies P, de Lange K, Neerincx PB, van der Vries G, Deelen P, Swertz MA, Li Y, Bischoff R, Permentier HP, Horvatovich PL, Groen AK, van Dijk G, Reijngoud DJ, Bakker BM. 2017. Running-wheel activity delays mitochondrial respiratory flux decline in aging mouse muscle via a post-transcriptional mechanism. Aging Cell e12700.
  • Zhang T, de Vries MP, Permentier HP, Bischoff R. 2017. Specific affinity enrichment of electrochemically cleaved peptides based on Cu(II)-mediated spirolactone tagging. Analytical Chemistry 89: 7123−7129.

2016

Publications:

  • Barata-Vallejo S, Ferreri C, Zhang T, Permentier H, Bischoff R, Bobrowski K, Chatgilialoglu C. 2016. Radiation Chemical Studies of Gly-Met-Gly in Aqueous Solution. Free Radical Research 1-32..
  • Bischoff R, Permentier H, Guryev V, Horvatovich P. 2016. Genomic variability and protein species - improving sequence coverage for proteogenomics. Journal of Proteomics 134:25-36.
  • van den Brink FTG, Zhang T, Ma L, Bomer J, Odijk M, Olthuis W, Permentier HP, Bischoff R, van den Berg A. 2016. Electrochemical protein cleavage in a microfluidic cell with integrated boron doped diamond electrodes. Analytical Chemistry 88:9190-9198.
  • van Eunen K, Volker-Touw CML, Gerding A, Bleeker A, Wolters JC, van Rijt WJ, Martines ACMF, Niezen-Koning KE, Heiner RM, Permentier H, Groen AK, Reijngoud DJ, Derks TGJ, Bakker BM. 2016. Living on the edge: substrate competition explains loss of robustness in mitochondrial fatty-acid oxidation disorders. BMC Biology 14:107.
  • Gul T, Krzek M, Permentier HP, Fraaije MW, Bischoff R. 2016. Microbial flavoprotein monooxygenases as mimics of mammalian flavin-containing monooxygenases for the enantioselective preparation of drug metabolites. Drug Metabolism and Disposition 44:1270-1276.
  • Krzek M, van Beek HL, Permentier HP, Bischoff R, Fraaije MW. 2016. Covalent immobilization of a flavoprotein monooxygenase via its flavin cofactor. Enzyme and Microbial Technology 82:138-143.
  • Le Thi Ngoc L, Yuan T, Oonishi N, van Nieuwkasteele J, van den Berg A, Permentier H, Bischoff R, Carlen ET. 2016. Suppression of surface-enhanced Raman scattering on gold nanostructures by metal adhesion layers. The Journal of Physical Chemistry. C: Nanomaterials and Interfaces 120(33):18756-18762.
  • Li M, de Graaf IAM, Siissalo S, de Jager MH, van Dam A, Groothuis GMM. 2016 The consequence of drug-drug interactions influencing the interplay between P-gp and Cyp3a: An ex vivo study with rat precision-cut intestinal slices. Drug Metabolism and Disposition 44(5):683-691.
  • Ruokolainen M, Gul T, Permentier H, Sikanen T, Kostiainen R, Kotiaho T. 2016. Comparison of TiO2 photocatalysis, electrochemically assisted Fenton reaction and direct electrochemistry for simulation of phase I metabolism reactions of drugs. European Journal of Pharmaceutical Sciences 83:36-44.
  • Schonewille M, de Boer JF, Mele L, Wolters H, Bloks VW, Wolters JC, Kuivenhoven JA, Tietge UJ, Brufau G, Groen AK. 2016. Statins increase hepatic cholesterol synthesis and stimulate fecal cholesterol elimination in mice. Journal of Lipid Research 57(8): 1455-1464.
  • Suarez-Mendez CA, Hanemaaijer M, Ten Pierick A, Wolters JC, Heijnen JJ, Wahl SA. 2016. Interaction of storage carbohydrates and other cyclic fluxes with central metabolism: A quantitative approach by non-stationary 13C metabolic flux analysis. Metabolic Engineering Communications 3: 52-63.
  • Wolters JC, Ciapaite J, van Eunen K, Niezen-Koning KE, Matton A, Porte RJ, Horvatovich P, Bakker BM, Bischoff R, Permentier HP. 2016. Translational targeted proteomics profiling of mitochondrial energy metabolic pathways in mouse and human samples. Journal of Proteome Research 15(9):3204-3213.
  • Zhang T, Niu X, Yuan T, Tessari M, de Vries MP, Permentier HP, Bischoff R. 2016. Efficient and selective chemical labeling of electrochemically generated peptides based on spirolactone chemistry. Analytical Chemistry 88:6465-6471.
  • Zhou L, Shao J, Li Q, van Heel AJ, de Vries MP, Broos J, Kuipers OP. 2016. Incorporation of tryptophan analogues into the lantibiotic nisin. Amino Acids 48(5):1309-1318.
  • van Zutphen T, Ciapaite J, Bloks VW, Ackereley C, Gerding A, Jurdzinski A, de Moraes RA, Zhang L, Wolters JC, Bischoff R, Wanders RJ, Houten SM, Bronte-Tinkew D, Shatseva T, Lewis GF, Groen AK, Reijngoud DJ, Bakker BM, Jonker JW, Kim PK, Bandsma RH. 2016. Malnutrition-associated liver steatosis and ATP depletion is caused by peroxisomal and mitochondrial dysfunction. Journal of Hepatology 65(6): 1198-1208

2015

Publications:

  • Baas BJ, Poddar H, Geertsema EM, Rozeboom HJ, de Vries MP, Permentier HP, Thunnisen AM, Poelarends GJ. 2015. Functional and structural characterization of an unusual cofactor-independent oxygenase. Biochemistry 54:1219-1232.
  • Gil A, Siegel D, Permentier H, Reijngoud DJ, Dekker F, Bischoff R. 2015. Stability of energy metabolites - An often overlooked issue in metabolomics studies: A review. Electrophoresis 36:2156-2169.
  • Gul T, Bischoff R, Permentier HP. 2015. Optimization of reaction parameters for the electrochemical oxidation of lidocaine with a Design of Experiments approach. Electrochimica Acta 171:23-28.
  • Gul T, Bischoff R, Permentier HP. 2015. Electrosynthesis methods and approaches for the preparative production of metabolites from parent drugs. TrAC-Trends in Analytical Chemistry 70:58-66.
  • Janssens GE, Meinema AC, González J, Wolters JC, Schmidt A, Guryev V, Bischoff R, Wit EC, Veenhoff LM, Heinemann M. 2015. Protein biogenesis machinery is a driver of replicative aging in yeast. ''Elife' '4: e08527.
  • Meijer K, Weening D, de Vries MP, Priebe MG, Vonk RJ, Roelofsen H. 2015. Quantitative proteomics analyses of activation states of human THP-1 macrophages. Journal of Proteomics 128:164-172.
  • Percy AJ, Tamura-Wells J, Pablo Albar J, Aloria K, Amirkhani A, Araujo GDT, Arizmendi JM, Blanco FJ, Canals F, Cho JY, Colomé-Calls N, Corrales FJ, Domont G, Espadas G, Fernandez-Puente P, Gil C, Haynes PA, Hernáez ML, Kim JY, Kopylov A, Marcilla M, McKay MJ, Mirzaei M, Molloy MP, Ohlund LB, Paik YK, Paradel a A, Raftery M, Sabidó E, Sleno L, Wilffert D, Wolters JC, Yoo JS, Zgoda V, Parker CE, Borchers CH. 2015. Inter-laboratory evaluation of instrument platforms and experimental workflows for quantitative accuracy and reproducibility assessment. EuPA Open Proteomics 8: 6-15.
  • Rahimi M, Ng EP, Bakhtiari K, Vinciguerra M, Ali Ahmad H, Awala H, Mintova S, Daghighi M, Bakhshandeh Rostami F, de Vries M, Motazacker MM, Peppelenbosch MP, Mahmoudi M, Rezaee F. 2015. Zeolite nanoparticles for selective sorption of plasma proteins. Scientific Reports 5:17259.
  • Sakulkhu U, Mahmoudi M, Maurizi L, Coullerez G, Hofmann-Amtenbrink M, de Vries M, Motazacker M, Rezaee F, Hofmann H. 2015. Significance of surface charge and shell material of superparamagnetic iron oxide nanoparticle (SPION) based core/shell nanoparticles on the composition of the protein corona. Biomaterials Science 3:265-278.
  • Yuan T, Le Thi Ngoc L, van Nieuwkasteele J, Odijk M, van den Berg A, Permentier H, Bischoff R, Carlen ET. 2015. In situ surface-enhanced Raman spectroelectrochemical analysis system with a hemin modified nanostructured gold surface. Analytical Chemistry 87:2588-2592.
  • Yuan T, Permentier H, Bischoff R. 2015. Surface-modified electrodes in the mimicry of oxidative drug metabolism. TrAC-Trends in Analytical Chemistry 70:50-57.

2014

Publications:

  • Dashty M, Motazacker MM, Levels J, de Vries M, Mahmoudi M, Peppelenbosch MP, Rezaee F. 2014. Proteome of human plasma very low-density lipoprotein and low-density lipoprotein exhibits a link with coagulation and lipid metabolism. Thrombosis and Haemostasis 111(3):518-530.
  • Nadal-Jimenez P, Koch G, Reis CR, Muntendam R, Raj H, Jeronimus-Stratingh CM, Cool RH, Quax WJ. 2014. PvdP is a tyrosinase that drives maturation of the pyoverdine chromophore in Pseudomonas aeruginosa. Journal of Bacteriology 196(14):2681–2690.
  • Natalia D, Vidilaseris K, Ismaya WT, Puspasari F, Prawira I, Hasan K, Permentier HP, Nurachman Z, Subroto T, Dijkstra BW, Soemitro S. 2014. Effect of introducing a disulphide bond between the A and C domains on the activity and stability of Saccharomycopsis fibuligera R64 α-amylase. Journal of Biotechnology 195:8-14.
  • Ourailidou ME, van der Meer JY, Baas BJ, Jeronimus-Stratingh M, Gottumukkala AL, Poelarends GJ, Minnaard AJ, Dekker FJ. 2014. Aqueous oxidative Heck reaction as a protein-labeling strategy. ChemBioChem 15(2):209-212.
  • Sakulkhu U, Maurizi L, Mahmoudi M, Motazacker M, de Vries M, Gramoun A, Ollivier Beuzelin MG, Vallée JP, Rezaee F, Hofmann H. 2014. Ex situ evaluation of the composition of protein corona of intravenously injected superparamagnetic nanoparticles in rats. Nanoscale 6:11439-11450.
  • Salentijn GIJ, Permentier HP, Verpoorte E. 2014. 3D-printed paper spray ionization cartridge with fast wetting and continuous solvent supply features. Analytical Chemistry 86(23):11657-11665.
  • Siegel D, Meinema AC, Permentier H, Hopfgartner G, Bischoff R. 2014. Integrated quantification and identification of aldehydes and ketones in biological samples. Analytical Chemistry 86(10):5089-5100.
  • Siegel D, Permentier H, Reijngoud DJ, Bischoff R. 2014. Chemical and technical challenges in the analysis of central carbon metabolites by liquid-chromatography mass spectrometry. Journal of Chromatography B 966:21-33.

2013

Publications:

  • Avanti C, Hinrichs WLJ, Casini A, Eissens AC, van Dam A, Kedrov A, Driessen AJM, Frijlink HW, Permentier HP. 2013. The formation of oxytocin dimers is suppressed by the zinc-aspartate-oxytocin complex. Journal of Pharmaceutical Sciences 102(6):1734-1741.
  • Bouma HR, Mandl JN, Strijkstra AM, Boerema AS, Kok JW, van Dam A, IJzerman A, Kroese FG, Henning RH. 2013. 5'-AMP impacts lymphocyte recirculation through activation of A2B receptors. Journal of Leukocyte Biology 94(1):89-98.
  • Budnik LT, Preisser AM, Permentier H, Baur X. 2013. Is specific IgE antibody analysis feasible for the diagnosis of methylenediphenyl diisocyanate-induced occupational asthma? International Archives of Occupational and Environmental Health 86(4):417-430.
  • Happyana N, Agnolet S, Muntendam R, van Dam A, Schneider B, Kayser O. 2013. Analysis of cannabinoids in laser-microdissected trichomes of medicinal Cannabis sativa using LCMS and cryogenic NMR. Phytochemistry 87:51–59.
  • Meszaros P, Klappe K, van Dam A, Ivanovac PT, Milnec SB, Myers DS, Brown HA, Permentier H, Hoekstra D, Kok JW. 2013. Long term myriocin treatment increases MRP1 transport activity. The International Journal of Biochemistry & Cell Biology 45(2):326-334.
  • Roeser J, Alting NFA, Permentier HP, Bruins AP, Bischoff R. 2013. Chemical labeling of electrochemically cleaved peptides. Rapid Communications in Mass Spectrometry 27: 546-552.
  • Roeser J, Alting NFA, Permentier HP, Bruins AP, Bischoff R. 2013. Boron-doped diamond electrodes for the electrochemical oxidation & cleavage of peptides. Analytical Chemistry 85(14): 6626-6632.
  • Siegel D, Permentier H, Bischoff R. 2013. Controlling detrimental effects of metal cations in the quantification of energy metabolites via ultrahigh pressure-liquid chromatography-electrospray-tandem mass spectrometry by employing acetylacetone as a volatile eluent modifier. Journal of Chromatography A 1294:87–97.
  • Siissalo S, de Waard H, de Jager MH, Hayeshi R, Frijlink HW, Hinrichs WL, Dinter-Heidorn H, van Dam A, Proost JH, Groothuis GM, de Graaf IA. 2013. Nanoparticle formulation of a poorly soluble cannabinoid receptor 1 antagonist improves absorption by rat and human intestine. Drug Metabolism and Disposition 41:1557-1565.

2012

Publications:

  • Avanti C, Permentier HP, van Dam A, Poole P, Jiskoot W, Frijlink HW, Hinrichs WLJ. 2012. A new strategy to stabilize oxytocin in aqueous solutions: II. Suppression of cysteine-mediated intermolecular reactions by a combination of divalent metal ions and citrate. Molecular Pharmaceutics 9(3):554-562.
  • Gandhi T, Puri P, Fusetti F, Breitling R, Poolman B, Permentier HP. 2012. Effect of iTRAQ labeling on the relative abundance of peptide fragment ions produced by MALDI-MS/MS. Journal Proteome Research 11(8):4044-4051.
  • Nouri-Nigjeh E, Bruins AP, Bischoff R, Permentier HP. 2012. Electrocatalytic oxidation of hydrogen peroxide on a platinum electrode in the imitation of oxidative drug metabolism by Cytochrome P450s. Analyst 137:4698-4702.
  • Nouri-Nigjeh E, de Vries MP, Bruins AP, Bischoff R, Permentier HP. 2012. Electrochemical oxidation of quaternary ammonium electrolytes: unexpected side reactions in organic electrochemistry. Electrochemistry Communications 21:54-57.

2011

Publications:

  • Bouma HR, Kroese FGM, Kok JW, Talaei F, Boerema AS, Herwig A, Draghiciu O, van Buiten A, Epema AH, van Dam A, Strijkstra AM Henning RH. 2011. Low body temperature governs the decline of circulating lymphocytes during hibernation through sphingosine-1-phosphate. Proceedings of the National Academy of Sciences 108(5):2052-2057.
  • Hendrawati O, Woerdenbag HJ, Michiels PJA, Aantjes HG, van Dam A, Kayser O. 2011. Identification of lignans and related compounds in Anthriscus sylvestris by LC-ESI-MS/MS and LC-SPE-NMR. Phytochemistry 72(17):2172-2179.
  • Klepsch MM, Kovermann M, Löw C, Balbach J, Permentier HP, Fusetti F, de Gier JW, Slotboom DJ, Berntsson RPA. 2011. Escherichia coli peptide binding protein OppA has a preference for positively charged peptides. Journal of Molecular Biology 414(1):75-85.
  • Marreddy RKR, Pinto JPC, Wolters JC, Geertsma ER, Fusetti F, Permentier HP, Kuipers OP, Kok J, Poolman B. 2011. The response of Lactococcus lactis to membrane protein production. Plos One 6(8).
  • Natalia D, Vidilaseris K, Satrimafitrah P, Purkan WTI, Permentier H, Fibriansah G, Puspasari F, Nurachman Z, Dijkstra BW, Soemitro S. 2011. Biochemical characterization of a glucoamylase from Saccharomycopsis fibuligera R64. Biologia 66(1):27-32.
  • Nouri-Nigjeh E, Bischoff R, Bruins AP, Permentier HP. 2011. Electrochemistry in the mimicry of oxidative drug metabolism by cytochrome P450s. Current Drug Metabolism 12(4):359-371.
  • Nouri-Nigjeh E, Bischoff R, Bruins AP, Permentier HP. 2011. Electrochemical oxidation by square-wave potential pulses in the imitation of phenacetin to acetaminophen biotransformation. Analyst 136(23):5064-5067.
  • Nouri-Nigjeh E, Permentier HP, Bischoff R, Bruins AP. 2011. Electrochemical oxidation by square-wave potential pulses in the imitation of oxidative drug metabolism. Analytical Chemistry 83(14):5519-5525.

2010

Publications:

  • Gandhi T, Fusetti F, Wiederhold E, Breitling R, Poolman B, Permentier HP. 2010. Apex peptide elution chain selection: A new strategy for selecting precursors in 2D-LC-MALDI-TOF/TOF experiments on complex biological samples. Journal of Proteome Research 9(11):5922-5928.
  • Klappe K, Dijkhuis AJ, Hummel I, van Dam A, Ivanova PT, Milne SB, Myers DS, Brown HA, Permentier H, Kok JW. 2010. Extensive sphingolipid depletion does not affect lipid raft integrity or lipid raft localization and efflux function of the ABC transporter MRP1. Biochemical Journal 430:519-529.
  • Marreddy RKR, Geertsma ER, Permentier HP, Pinto JPC, Kok J, Poolman B. 2010. Amino acid accumulation limits the overexpression of proteins in Lactococcus lactis. Plos One 5(4).
  • Nouri-Nigjeh E, Permentier HP, Bischoff R, Bruins AP. 2010. Lidocaine oxidation by electrogenerated reactive oxygen species in the light of oxidative drug metabolism. Analytical Chemistry 82(18):7625-7633.
  • Roeser J, Bischoff R, Bruins AP, Permentier HP. 2010. Oxidative protein labeling in mass-spectrometry-based proteomics. Analytical and Bioanalytical Chemistry 397(8):3441-3455.
  • Roeser J, Permentier HP, Bruins AP, Bischoff R. 2010. Electrochemical oxidation and cleavage of tyrosine- and tryptophan-containing tripeptides. Analytical Chemistry 82(18):7556-7565.
  • de Vries L, Reitzema-Klein C, Meter-Arkema A, van Dam A, Rink R, Moll GN, Akanbi MHJ. 2010. Oral and pulmonary delivery of thioether-bridged angiotensin-(1-7). Peptides 31(5):893-898.

Before 2010

Publications:

  • Guo XH, Bruins AP, Covey TR, Trötzmüller M, Lankmayr E. 2009. Alternative reagents for chemical noise reduction in liquid chromatography-mass spectrometry using selective ion-molecule reactions. Journal of the American Society for Mass Spectrometry 20(1):105-111.
  • Wiederhold E, Gandhi T, Permentier HP, Breitling R, Poolman B, Slotboom DJ. 2009. The yeast vacuolar membrane proteome. Molecular & Cellular Proteomics 8(2):380-392.
  • El Khattabi M, van Roosmalen ML, Jager D, Metselaar H, Permentier H, Leenhouts K, Broos J. 2008. Lactococcus lactis as expression host for the biosynthetic incorporation of tryptophan analogues into recombinant proteins. Biochemical Journal 409:193-198.
  • van Loo B, Permentier HP, Kingma J, Baldascini H, Janssen DB. 2008. Inactivation of epoxide hydrolase by catalysis-induced formation of isoaspartate. FEBS Letters 582(11):1581-1586.
  • Permentier HP, Bruins AP, Bischoff R. 2008. Electrochemistry-mass spectrometry in drug metabolism and protein research. Mini-Reviews in Medicinal Chemistry 8(1):46-56.
  • Windt W, van Dokkum RPE, Kluppel CA, Jeronimus-Stratingh CM, Hut F, de Zeeuw D, Henning RH. 2008. Therapeutic resistance to angiotensin converting enzyme (ACE) inhibition is related to pharmacodynamic and -kinetic factors in 5/6 nephrectomized rats. European Journal of Pharmacology 580(1-2):231-240.
  • Duurkens RH, Tol MB, Geertsma ER, Permentier HP, Slotboom DJ. 2007. Flavin binding to the high affinity riboflavin transporter RibU. Journal of Biological Chemistry 282(14):10380-10386.
  • Gosiewska S, Permentier HP, Bruins AP, van Koten G, Klein Gebbink RJM. 2007. Characterization and alkane oxidation activity of a diastereopure seven-coordinate iron(III) alkylperoxo complex. Dalton Transactions 31:3365-3368.
  • Guo XH, Bruins AP, Covey TR. 2007. Method to reduce chemical background interference in atmospheric pressure ionization liquid chromatography-mass spectrometry using exclusive reactions with the chemical reagent dimethyl disulfide. Analytical Chemistry 79(11):4013-4021.
  • de Jong LAA, Jeronimus-Stratingh CM, Cremers TIFH. 2007. Development of a multiplex non-radioactive receptor assay: The benzodiazepine receptor, the serotonin transporter and the beta-adrenergic receptor. Rapid Communications in Mass Spectrometry 21(4):567–572.
  • Bambirra S, Meetsma A, Hessen B, Bruins AP. 2006. Cationic group 3 alkyl complexes with isopropyl-substituted triazacyclononane-amide ligands: Synthesis, structure, and thermal decomposition processes. Organometallics 25:3486-3495.
  • Guo XH, Bruins AP, Covey TR. 2006. Characterization of typical chemical background interferences in atmospheric pressure ionization liquid chromatography-mass spectrometry. Rapid Communications in Mass Spectrometry 20(20):3145-3150.
  • Kauppila TJ, Bruins AP, Kostiainen R. 2005. Effect of the solvent flow rate on the ionization efficiency in atmospheric pressure photoionization-mass spectrometry. Journal of the American Society for Mass Spectrometry 16(8):1399-1407.
  • Panella L, Broos J, Jin JF, Fraaije MW, Janssen DB, Jeronimus-Stratingh M, Feringa BL, Minnaard AJ, de Vries JG. 2005. Merging homogeneous catalysis with biocatalysis; papain as hydrogenation catalyst. Chemical Communications (45):5656-5658.
  • Kauppila TJ, Kostiainen R, Bruins AP. 2004. Anisole, a new dopant for atmospheric pressure photoionization mass spectrometry of low proton affinity, low ionization energy compounds. Rapid Communications in Mass Spectrometry 18(7):808-815.
  • Kauppila TJ, Kotiaho T, Kostiainen R, Bruins AP. 2004. Negative ion-atmospheric pressure photoionization-mass spectrometry. Journal of the American Society for Mass Spectrometry 15(2):203-211.
  • Permentier HP, Bruins AP. 2004. Electrochemical oxidation and cleavage of proteins with on-line mass spectrometric detection: Development of an instrumental alternative to enzymatic protein digestion. Journal of the American Society for Mass Spectrometry 15(12):1707-1716.
  • Wang X, Permentier HP, Rink R, Kruijtzer JAW, Liskamp RMJ, Wösten HAB, Poolman B, Robillard GT. 2004. Probing the self-assembly and the accompanying structural changes of hydrophobin SC3 on a hydrophobic surface by mass spectrometry. Biophysical Journal 87(3):1919-1928.
  • van Hout MWJ, Hofland CM, Niederländer HAG, Bruins AP, de Zeeuw RA, de Jong GJ. 2003. On-line coupling of solid-phase extraction with mass spectrometry for the analysis of biological samples: III. Determination of prednisolone in serum. Journal of Chromatography B 794(1):185-192.
  • Jurva U, Wikström HV, Weidolf L, Bruins AP. 2003. Comparison between electrochemistry/mass spectrometry and cytochrome P450 catalyzed oxidation reactions. Rapid Communications in Mass Spectrometry 17(8):800-810.
  • Permentier HP, Jurva U, Barroso B, Bruins AP. 2003. Electrochemical oxidation and cleavage of peptides analyzed with on-line mass spectrometric detection. Rapid Communications in Mass Spectrometry 17(14):1585-1592.
  • Jurva U, Wikström HV, Bruins AP. 2002. Electrochemically assisted Fenton reaction: Reaction of hydroxyl radicals with xenobiotics followed by on-line analysis with high-performance liquid chromatography/tandem mass spectrometry. Rapid Communications in Mass Spectrometry 16(20):1934-1940.
  • Polderman-Tijmes JJ, Jekel PA, Jeronimus-Stratingh CM, Bruins AP, van der Laan JM, Sonke T, Janssen DB. 2002. Identification of the catalytic residues of alpha-amino acid ester hydrolase from Acetobacter turbidans by labeling and site-directed mutagenesis. Journal of Biological Chemistry 277(32):28474-28482.
  • Jurva U, Wikström HV, Bruins AP. 2000. In vitro mimicry of metabolic oxidation reactions by electrochemistry/mass spectrometry. Rapid Communications in Mass Spectrometry 14(6):529-533.
  • Robb DB, Covey TR, Bruins AP. 2000. Atmospheric pressure photoionisation: An ionization method for liquid chromatography-mass spectrometry. Analytical Chemistry 72(15):3653-3659.
  • Bruins CHP, Jeronimus-Stratingh CM, Ensing K, van Dongen WD, de Jong GJ. 1999. On-line coupling of solid-phase extraction with mass spectrometry for the analysis of biological samples: I. Determination of clenbuterol in urine. Journal of Chromatography A 863(1):115-122.
  • Bruins AP. 1998. Mechanistic aspects of electrospray ionization. Journal of Chromatography A 794(1-2):345-357.
  • Kunji ERS, Fang G, Jeronimus-Stratingh CM, Bruins AP, Poolman B, Konings WN. 1998. Reconstruction of the proteolytic pathway for use of beta-casein by Lactococcus lactis. Molecular Microbiology 27(6):1107-1118.
  • van der Wal S, Mengerink Y, Brackman JC, de Brabander, EMM, Jeronimus-Stratingh CM, Bruins AP. 1998. Compositional analysis of nitrile terminated poly(propylene imine) dendrimers by high-performance liquid chromatography combined with electrospray mass spectrometry. Journal of Chromatography A 825(2):135-147.

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